gmap

The genomic mapping and alignment program handles several different tasks in alignment and mapping workflows. It allows the user to map and align single cDNA against large genomes, switching between genomes at will, generating accurate gene models despite the presence of significant polymorphisms or sequencing errors, locating splice sites, detect microexons, and handling mapping across genomes with alternative assemblies.

tip

Note several other tools load with this module and can be seen running the following command: report_subtools.sh gmap

Parallel Capabilities: Single core default. Multithreading options supported.