Prokka

Prokka is a prokaryotic, archaeal, and viral genome annotator. It utilizes several databases to determine its annotations including ISfinder, UniProtKB, HMMER, and NCBI bacterial antimicrobial resistance reference gene databases. It takes a contigs file and outputs several different files in a PROKKA_YYYYMMDD directory.

For additional information and execution examples please see the documentation

ml biocontainers prokka
prokka contigs.fa

Parallel Capabilities: Single core default, Multithreading options supported.