Gapseq

Gapseq is designed to combine metabolic pathway analysis with metabolic network reconstruction and curation. It can be used to predict metabolic pathways from various databases, metabolic model construction, and more!

To load on Palmetto 2:

module load biocontainers
module load gapseq

To see examples and explanation of the tool in more detail please see their official documentation page.

Parallel Capabilities: Single Core only.