QUAST

QUAST evaluates genome assemblies by computing various metrics. For input, it takes assemblies and a reference genome in FASTA format. It outputs several files containing informative plots and statistics. This module also loads metaquast.py.

For additional information and examples, please see the QUAST documentation.

ml biocontainers quast
quast.py contigs1.fasta contigs2.fasta -r reference.fasta.gz -g genes.gff

Parallel Capabilities: Single core only.