Glnexus

Glnexus is for scalable gVCF merging and joint variant calling for population sequencing projects.

To load glnexus on Palmetto 2:

module load biocontainers
module load glnexus

For usage and a hands on example please see their official documentation.

Parallel Capabilities: Multithreading default. Max 16 cores, beyond that it hasn't been profiled.