spades

Spades is an assembly toolkit consisting of several pipelines. It takes paired-end, mate-pairs, and unpaired reads as input. It then outputs several files that contain everything from the scaffolds to the assembly graph. By default the thread count is 16.

tip

Note several other tools load with this module and can be seen running the following command: report_subtools.sh spades

For additional information and examples please see the documentation

ml biocontainers spades
spades.py --help

Parallel Capabilities: Multithreading options supported.