sra-tools

The sra-toolkit consists of several tools for using data in the Sequence Read Archives.

tip

Note several other tools load with this module and can be seen running the following command:

report_subtools.sh sra-tools

For additional information see the documentation

ml biocontainers sra-tools
fasterq-dump -O <output dir> <SRR#>

Parallel Capabilities: Single core only.