SRA Toolkit

The SRA Toolkit consists of several tools for using data in the Sequence Read Archives (SRA) of the National Center for Biotechnology Information (NCBI).

tip

Several other tools load with this module. Review additional available tools using the command below:

report_subtools.sh sra-tools

For additional information, see the SRA Toolkit's documentation.

ml biocontainers sra-tools
fasterq-dump -O <output dir> <SRR#>

Parallel Capabilities: Single core only.